| Pick # | Team | Player | Pick # | Team | Player | Pick # | Team | Player | ||
| 1 | MAN | Villar, Jonathan | 14 | HOL | Hill, Rich | 27 | LAK | Aybar, Erick | ||
| 2 | BEV | Finnegan, Brandon | 15 | GAL | Freese, David | 28 | ORL | Ramirez, Alexei | ||
| 3 | ORL | Samardzija, Jeff | 16 | BCD | Jaso, John | 29 | HOL | Pass | ||
| 4 | BEV | Velasquez, Vince | 17 | ADD | Herrmann, Chris | 30 | BGN | Gillaspie, Conor | ||
| 5 | BCD | Moore, Matt | 18 | WES | Thompson, Trayce | 31 | ORL | Loney, James# | ||
| 6 | MIL | Nova, Ivan | 19 | JER | Flowers, Tyler | 32 | GAL | Beckham, Gordon | ||
| 7 | MAN | Zobrist, Ben | 20 | HOL | Nunez, Eduardo | 33 | MIL | Norris, Bud# | ||
| 8 | MIL | Kazmir, Scott | 21 | BGN | Krol, Ian | 34 | ORL | Boyer, Blaine | ||
| 9 | MIL | Carter, Chris# | 22 | BGN | Rodney, Fernando | 35 | ORL | Reddick, Josh# | ||
| 10 | BCD | Cabrera, Asdrubal | 23 | LAK | Feliz, Neftali | 36 | MAN | Salas, Fernando | ||
| 11 | MIL | Chen, Wei-Yin | 24 | GAL | Joyce, Matt# | 37 | BGN | Rosales, Adam# | ||
| 12 | MAN | Pomeranz, Drew# | 25 | MIL | Drew, Stephen | 38 | LAK | Chavez, Jesse# | ||
| 13 | HOL | Montgomery, Mike | 26 | LAK | Rivera, Rene |